To install Scaden via pip, simply run the following command:
pip install scaden
If you don't want to install Scaden at all, but rather use a Docker container, we provide that as well. For every release, we provide two version - one for CPU and one for GPU usage. To pull the CPU container, use this command:
docker pull ghcr.io/kevinmenden/scaden/scaden
For the GPU container:
docker pull ghcr.io/kevinmenden/scaden/scaden-gpu
We now also provide a webtool for you:
It comes with pre-generated training datasets for several tissues. You only need to upload the epxression data for prediction. Please not that this is still in beta.