Installation via Bioconda is the preferred route of installation, and we highly recommend using conda. To install Scaden, use:
conda install -c bioconda scaden
It is always recommended to create a separate conda environment for installation.
If you don't want to use conda, you can also install Scaden using pip:
pip install scaden
If you don't want to install Scaden at all, but rather use a Docker container, we provide that as well. You can pull the Scaden docker container with the following command (from Dockerhub):
docker pull kevinmenden/scaden
We now also provide a webtool for you:
It comes with pre-generated training datasets for several tissues. You only need to upload the epxression data for prediction. Please not that this is still in beta.